====== Advanced Software Topics ======

==== Types of Software ====

==== Software List ====

Link to list of all centrally installed software on our HPC facilities:

   * [[:advanced:software_list|Software list]] - a list of all the software modules provided on Comet, and software requests which have been made
   * [[:advanced:software_list|Containers list]] - a list of all the pre-built container environments we provide on Comet

==== Software Title Help ====

Link to individual help pages. These include, where necessary, the steps to install the software on our HPC facilities, as well as instructions on how to run them in our HPC environment, or specific examples of Slurm job scripts:

   * [[:advanced:anaconda|Anaconda]]
   * [[:advanced:software:ansys|Ansys]]
   * [[:advanced:aws_cli|Amazon Web Services tools - aws-cli]]
   * [[:advanced:apptainer|Apptainer]]
   * [[:advanced:cellranger|Cell Ranger]]
   * [[:advanced:comfyui|ComfyUI]]
   * [[:advanced:dbcan|Dbcan]] 
   * [[:advanced:DNAscent]]
   * [[:advanced:Flower|Flower]] 
   * [[:advanced:fMRIPrep|fMRIPrep]]
   * [[:advanced:genoscores|Genoscores]] 
   * [[:advanced:jupyter|Jupyter Lab]] 
   * [[:advanced:matlab|Matlab]]
   * [[:advanced:mozaik|Mozaik]]
   * [[:advanced:nextflow|nextflow]]
   * [[:advanced:python_modules|Python module installations]]
   * [[:advanced:r_libraries|R library installations]]
   * [[:advanced:rclone|Rclone]]
   * [[:advanced:scrinvex|Scrinvex]]
   * [[:advanced:STAR-CCM+]]
   * [[:advanced:statamp|Stata/MP]]
   * [[:advanced:VS_Code|Visual Studio Code (VSCode)]]
   

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