====== HTSlib ======

**HTSlib** is a software module available on **Comet**.

===== HTSlib overview =====

To access **HTSlib** on Comet, run ''module load HTSlib''. This will load the //default// version of **HTSlib**.

An overview of the module information is shown below (''module -r spider ^HTSlib$''):

<code lang=text>
  HTSlib:
    Description:
      A C library for reading/writing high-throughput sequencing data. This package includes the utilities bgzip and tabix

     Versions:
        HTSlib/1.18-GCC-12.3.0
        HTSlib/1.19.1-GCC-13.2.0
        HTSlib/1.21-GCC-13.3.0

  For detailed information about a specific "HTSlib" package (including how to load the modules) use the module's full name.
  Note that names that have a trailing (E) are extensions provided by other modules.
  For example:

     $ module spider HTSlib/1.21-GCC-13.3.0
</code>

If there are multiple versions of **HTSlib** listed, then you can load a //specific// version as follows:
<code lang=bash>
$ module load HTSlib/version_string
</code>

You can find the most //up to date information// whilst logged on to Comet by running ''module -r spider ^HTSlib$''.

----

===== HTSlib Help =====

The module **HTSlib** has the following embedded help text (''module help HTSlib''):

<code lang=text>Description
===========
A C library for reading/writing high-throughput sequencing data.
 This package includes the utilities bgzip and tabix

More information
================
 - Homepage: https://www.htslib.org/

</code>

----

===== HTSlib Dependencies =====

The //default// version of the module **HTSlib** has the following dependencies:

   * GCC/13.3.0
   * zlib/1.3.1-GCCcore-13.3.0
   * bzip2/1.0.8-GCCcore-13.3.0
   * XZ/5.4.5-GCCcore-13.3.0
   * cURL/8.7.1-GCCcore-13.3.0

----

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