====== SPAdes ======

**SPAdes** is a software module available on **Comet**.

===== SPAdes overview =====

To access **SPAdes** on Comet, run ''module load SPAdes''. This will load the //default// version of **SPAdes**.

An overview of the module information is shown below (''module -r spider ^SPAdes$''):

<code lang=text>
  SPAdes:
    Description:
      SPAdes - Genome assembly toolkit

     Versions:
        SPAdes/4.1.0-GCC-13.3.0
        SPAdes/4.2.0

  For detailed information about a specific "SPAdes" package (including how to load the modules) use the module's full name.
  Note that names that have a trailing (E) are extensions provided by other modules.
  For example:

     $ module spider SPAdes/4.2.0
</code>

If there are multiple versions of **SPAdes** listed, then you can load a //specific// version as follows:
<code lang=bash>
$ module load SPAdes/version_string
</code>

You can find the most //up to date information// whilst logged on to Comet by running ''module -r spider ^SPAdes$''.

----

===== SPAdes Help =====

The module **SPAdes** has the following embedded help text (''module help SPAdes''):

<code lang=text>SPAdes 4.2.0 - Genome assembler for single-cell and multicell bacterial datasets.

This module sets up the environment to run SPAdes tools.

Examples:
    spades.py --help
    metaspades.py --help

</code>

----

===== SPAdes Dependencies =====

There are no dependencies listed for **SPAdes**

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