BCL_convert

BCL_convert is a tool for working with data generated by Illumina sequencing instruments. It is also the replacement for bcl2fastq which is no longer updated or supported by Illumina.

For more information: https://emea.support.illumina.com/sequencing/sequencing_software/bcl-convert.html

Roadmap for BCL_convert

Please note that we now recommend the use of the replacement Bioapps container image which includes BCL_convert and many more common bioinformatics tools and avoids the need for careful matching of dependencies between loaded software modules.

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