HTSlib

HTSlib is a software module available on Comet.

To access HTSlib on Comet, run module load HTSlib. This will load the default version of HTSlib.

An overview of the module information is shown below (module -r spider ^HTSlib$):

HTSlib:
    Description:
      A C library for reading/writing high-throughput sequencing data. This package includes the utilities bgzip and tabix

     Versions:
        HTSlib/1.18-GCC-12.3.0
        HTSlib/1.19.1-GCC-13.2.0
        HTSlib/1.21-GCC-13.3.0

  For detailed information about a specific "HTSlib" package (including how to load the modules) use the module's full name.
  Note that names that have a trailing (E) are extensions provided by other modules.
  For example:

     $ module spider HTSlib/1.21-GCC-13.3.0

If there are multiple versions of HTSlib listed, then you can load a specific version as follows:

$ module load HTSlib/version_string

You can find the most up to date information whilst logged on to Comet by running module -r spider ^HTSlib$.

The module HTSlib has the following embedded help text (module help HTSlib):

Description
===========
A C library for reading/writing high-throughput sequencing data.
 This package includes the utilities bgzip and tabix

More information
================
 - Homepage: https://www.htslib.org/

The default version of the module HTSlib has the following dependencies:

• GCC/13.3.0
• zlib/1.3.1-GCCcore-13.3.0
• bzip2/1.0.8-GCCcore-13.3.0
• XZ/5.4.5-GCCcore-13.3.0
• cURL/8.7.1-GCCcore-13.3.0

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