ont-guppy is a software module available on Comet.
To access ont-guppy on Comet, run module load ont-guppy. This will load the default version of ont-guppy.
An overview of the module information is shown below (module -r spider ^ont-guppy$):
ont-guppy:
Description:
Guppy is a bioinformatics toolkit that enables real-time basecalling and several post-processing features that works on Oxford Nanopore
Technologies™ sequencing platforms. For Research Use Only
Versions:
ont-guppy/6.4.8-CUDA-11.7.0
For detailed information about a specific "ont-guppy" package (including how to load the modules) use the module's full name.
Note that names that have a trailing (E) are extensions provided by other modules.
For example:
$ module spider ont-guppy/6.4.8-CUDA-11.7.0
If there are multiple versions of ont-guppy listed, then you can load a specific version as follows:
$ module load ont-guppy/version_string
You can find the most up to date information whilst logged on to Comet by running module -r spider ^ont-guppy$.
The module ont-guppy has the following embedded help text (module help ont-guppy):
Description
===========
Guppy is a bioinformatics toolkit that enables real-time basecalling and several
post-processing features that works on Oxford Nanopore Technologies™ sequencing platforms.
For Research Use Only
More information
================
- Homepage: https://community.nanoporetech.com/protocols/Guppy-protocol
The default version of the module ont-guppy has the following dependencies: