Pysam is a software module available on Comet.
To access Pysam on Comet, run module load Pysam. This will load the default version of Pysam.
An overview of the module information is shown below (module -r spider ^Pysam$):
Pysam:
Description:
Pysam is a python module for reading and manipulating Samfiles. It's a lightweight wrapper of the samtools C-API. Pysam also
includes an interface for tabix.
Versions:
Pysam/0.22.0-GCC-12.3.0
Pysam/0.22.1-GCC-13.3.0
For detailed information about a specific "Pysam" package (including how to load the modules) use the module's full name.
Note that names that have a trailing (E) are extensions provided by other modules.
For example:
$ module spider Pysam/0.22.1-GCC-13.3.0
If there are multiple versions of Pysam listed, then you can load a specific version as follows:
$ module load Pysam/version_string
You can find the most up to date information whilst logged on to Comet by running module -r spider ^Pysam$.
The module Pysam has the following embedded help text (module help Pysam):
Description
===========
Pysam is a python module for reading and manipulating Samfiles.
It's a lightweight wrapper of the samtools C-API. Pysam also includes an interface for tabix.
More information
================
- Homepage: https://github.com/pysam-developers/pysam
The default version of the module Pysam has the following dependencies: