Salmon

Salmon is a software module available on Comet.

To access Salmon on Comet, run module load Salmon. This will load the default version of Salmon.

An overview of the module information is shown below (module -r spider ^Salmon$):

Salmon: Salmon/1.10.3-GCC-12.3.0
    Description:
      Salmon is a wicked-fast program to produce a highly-accurate, transcript-level quantification estimate from RNA-seq data.

    This module can be loaded directly: module load Salmon/1.10.3-GCC-12.3.0

    Help:
      
      Description
      ===========
      Salmon is a wicked-fast program to produce a highly-accurate,
       transcript-level quantification estimate from RNA-seq data.
      
      More information
      ================
       - Homepage: https://github.com/COMBINE-lab/salmon

If there are multiple versions of Salmon listed, then you can load a specific version as follows:

$ module load Salmon/version_string

You can find the most up to date information whilst logged on to Comet by running module -r spider ^Salmon$.

The module Salmon has the following embedded help text (module help Salmon):

Description
===========
Salmon is a wicked-fast program to produce a highly-accurate,
 transcript-level quantification estimate from RNA-seq data.

More information
================
 - Homepage: https://github.com/COMBINE-lab/salmon

The default version of the module Salmon has the following dependencies:

• GCC/12.3.0
• Boost/1.82.0-GCC-12.3.0
• tbb/2021.11.0-GCCcore-12.3.0
• cURL/8.0.1-GCCcore-12.3.0
• libiconv/1.17-GCCcore-12.3.0
• bzip2/1.0.8-GCCcore-12.3.0
• XZ/5.4.2-GCCcore-12.3.0
• zlib/1.2.13-GCCcore-12.3.0

Back to software