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SPAdes

SPAdes is a software module available on Comet.

SPAdes overview

To access SPAdes on Comet, run module load SPAdes. This will load the default version of SPAdes.

An overview of the module information is shown below (module -r spider ^SPAdes$): 

SPAdes:
    Description:
      SPAdes - Genome assembly toolkit

     Versions:
        SPAdes/4.1.0-GCC-13.3.0
        SPAdes/4.2.0

  For detailed information about a specific "SPAdes" package (including how to load the modules) use the module's full name.
  Note that names that have a trailing (E) are extensions provided by other modules.
  For example:

     $ module spider SPAdes/4.2.0

If there are multiple versions of SPAdes listed, then you can load a specific version as follows: 

$ module load SPAdes/version_string

You can find the most up to date information whilst logged on to Comet by running module -r spider ^SPAdes$.

SPAdes Help

The module SPAdes has the following embedded help text (module help SPAdes): 

SPAdes 4.2.0 - Genome assembler for single-cell and multicell bacterial datasets.

This module sets up the environment to run SPAdes tools.

Examples:
    spades.py --help
    metaspades.py --help

SPAdes Dependencies

There are no dependencies listed for SPAdes

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