Trim_Galore is a software module available on Comet.
To access Trim_Galore on Comet, run module load Trim_Galore. This will load the default version of Trim_Galore.
An overview of the module information is shown below (module -r spider ^Trim_Galore$):
Trim_Galore: Trim_Galore/0.6.10-GCCcore-12.3.0
Description:
Trim Galore! is a wrapper script to automate quality and adapter trimming as well as quality control, with some added functionality
to remove biased methylation positions for RRBS sequence files (for directional, non-directional (or paired-end) sequencing).
This module can be loaded directly: module load Trim_Galore/0.6.10-GCCcore-12.3.0
Help:
Description
===========
Trim Galore! is a wrapper script to automate quality and adapter
trimming as well as quality control, with some added functionality to remove biased
methylation positions for RRBS sequence files (for directional, non-directional
(or paired-end) sequencing).
More information
================
- Homepage: https://www.bioinformatics.babraham.ac.uk/projects/trim_galore/
If there are multiple versions of Trim_Galore listed, then you can load a specific version as follows:
$ module load Trim_Galore/version_string
You can find the most up to date information whilst logged on to Comet by running module -r spider ^Trim_Galore$.
The module Trim_Galore has the following embedded help text (module help Trim_Galore):
Description
===========
Trim Galore! is a wrapper script to automate quality and adapter
trimming as well as quality control, with some added functionality to remove biased
methylation positions for RRBS sequence files (for directional, non-directional
(or paired-end) sequencing).
More information
================
- Homepage: https://www.bioinformatics.babraham.ac.uk/projects/trim_galore/
The default version of the module Trim_Galore has the following dependencies: