Cufflinks

Cufflinks is a software module available on Comet.

To access Cufflinks on Comet, run module load Cufflinks. This will load the default version of Cufflinks.

An overview of the module information is shown below (module -r spider ^Cufflinks$):

Cufflinks: Cufflinks/20190706-GCC-12.3.0
    Description:
      Transcript assembly, differential expression, and differential regulation for RNA-Seq

    This module can be loaded directly: module load Cufflinks/20190706-GCC-12.3.0

    Help:
      
      Description
      ===========
      Transcript assembly, differential expression, and differential regulation for RNA-Seq
      
      More information
      ================
       - Homepage: http://cole-trapnell-lab.github.io/cufflinks/

If there are multiple versions of Cufflinks listed, then you can load a specific version as follows:

$ module load Cufflinks/version_string

You can find the most up to date information whilst logged on to Comet by running module -r spider ^Cufflinks$.

The module Cufflinks has the following embedded help text (module help Cufflinks):

Description
===========
Transcript assembly, differential expression, and differential regulation for RNA-Seq

More information
================
 - Homepage: http://cole-trapnell-lab.github.io/cufflinks/

The default version of the module Cufflinks has the following dependencies:

• GCC/12.3.0
• zlib/1.2.13-GCCcore-12.3.0
• HTSlib/1.18-GCC-12.3.0

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