ont-guppy

ont-guppy is a software module available on Comet.

To access ont-guppy on Comet, run module load ont-guppy. This will load the default version of ont-guppy.

An overview of the module information is shown below (module -r spider ^ont-guppy$):

ont-guppy:
    Description:
      Guppy is a bioinformatics toolkit that enables real-time basecalling and several post-processing features that works on Oxford Nanopore
      Technologies™ sequencing platforms. For Research Use Only 

     Versions:
        ont-guppy/6.4.8-CUDA-11.7.0

  For detailed information about a specific "ont-guppy" package (including how to load the modules) use the module's full name.
  Note that names that have a trailing (E) are extensions provided by other modules.
  For example:

     $ module spider ont-guppy/6.4.8-CUDA-11.7.0

If there are multiple versions of ont-guppy listed, then you can load a specific version as follows:

$ module load ont-guppy/version_string

You can find the most up to date information whilst logged on to Comet by running module -r spider ^ont-guppy$.

The module ont-guppy has the following embedded help text (module help ont-guppy):

Description
===========
Guppy is a bioinformatics toolkit that enables real-time basecalling and several
 post-processing features that works on Oxford Nanopore Technologies™ sequencing platforms.

 For Research Use Only

More information
================
 - Homepage: https://community.nanoporetech.com/protocols/Guppy-protocol

The default version of the module ont-guppy has the following dependencies:

• CUDA/11.7.0

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