rerio

rerio is a software module available on Comet.

To access rerio on Comet, run module load rerio. This will load the default version of rerio.

An overview of the module information is shown below (module -r spider ^rerio$):

rerio: rerio/5.0.11
    Description:
      Research-release basecalling & modified-base models for ONT tools.

    This module can be loaded directly: module load rerio/5.0.11

    Help:
      Rerio — ONT “research release” models repo + downloader.
      
      This module exposes the Rerio download script and points to a shared
      models directory so users can pull or use models without guessing paths.
      
      Repo root:
        /opt/software/manual/source/rerio
      
      Typical usage:
        module load Rerio/2025.08
        download_model.py -h
        download_model.py --output $RERIO_MODELS <model_id_or_list>

If there are multiple versions of rerio listed, then you can load a specific version as follows:

$ module load rerio/version_string

You can find the most up to date information whilst logged on to Comet by running module -r spider ^rerio$.

The module rerio has the following embedded help text (module help rerio):

Rerio — ONT “research release” models repo + downloader.

This module exposes the Rerio download script and points to a shared
models directory so users can pull or use models without guessing paths.

Repo root:
  /opt/software/manual/source/rerio

Typical usage:
  module load Rerio/2025.08
  download_model.py -h
  download_model.py --output $RERIO_MODELS <model_id_or_list>

There are no dependencies listed for rerio

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