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Trace: • hail • remora • plink • lammps • perl • subread • openfoam • openblas • quantum_espresso • star

STAR

STAR is a software module available on Comet.

STAR overview

To access STAR on Comet, run module load STAR. This will load the default version of STAR.

An overview of the module information is shown below (module -r spider ^STAR$):

STAR: STAR/2.7.11b-GCC-13.2.0
    Description:
      STAR aligns RNA-seq reads to a reference genome using uncompressed suffix arrays.

     Other possible modules matches:
        STAR-CCM+

    This module can be loaded directly: module load STAR/2.7.11b-GCC-13.2.0

    Help:
      
      Description
      ===========
      STAR aligns RNA-seq reads to a reference genome using uncompressed suffix arrays.
      
      More information
      ================
       - Homepage: https://github.com/alexdobin/STAR
      

  To find other possible module matches execute:

      $ module -r spider '.*STAR.*'

If there are multiple versions of STAR listed, then you can load a specific version as follows:

$ module load STAR/version_string

You can find the most up to date information whilst logged on to Comet by running module -r spider ^STAR$.


STAR Help

The module STAR has the following embedded help text (module help STAR):

Description
===========
STAR aligns RNA-seq reads to a reference genome using uncompressed suffix arrays.

More information
================
 - Homepage: https://github.com/alexdobin/STAR


STAR Dependencies

The default version of the module STAR has the following dependencies:

  • GCC/13.2.0
  • HTSlib/1.19.1-GCC-13.2.0
  • zlib/1.2.13-GCCcore-13.2.0

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Table of Contents

  • STAR
    • STAR overview
    • STAR Help
    • STAR Dependencies

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