Unicycler

Unicycler is a software module available on Comet.

To access Unicycler on Comet, run module load Unicycler. This will load the default version of Unicycler.

An overview of the module information is shown below (module -r spider ^Unicycler$):

Unicycler: Unicycler/0.5.1-gompi-2024a
    Description:
      Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets where it functions as a
      SPAdes-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore) where it runs a miniasm+Racon pipeline. 

    This module can be loaded directly: module load Unicycler/0.5.1-gompi-2024a

    Help:
      
      Description
      ===========
      Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets
       where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore)
       where it runs a miniasm+Racon pipeline.
      
      More information
      ================
       - Homepage: https://github.com/rrwick/Unicycler

If there are multiple versions of Unicycler listed, then you can load a specific version as follows:

$ module load Unicycler/version_string

You can find the most up to date information whilst logged on to Comet by running module -r spider ^Unicycler$.

The module Unicycler has the following embedded help text (module help Unicycler):

Description
===========
Unicycler is an assembly pipeline for bacterial genomes. It can assemble Illumina-only read sets
 where it functions as a SPAdes-optimiser. It can also assembly long-read-only sets (PacBio or Nanopore)
 where it runs a miniasm+Racon pipeline.

More information
================
 - Homepage: https://github.com/rrwick/Unicycler

The default version of the module Unicycler has the following dependencies:

• gompi/2024a
• Python/3.12.3-GCCcore-13.3.0
• SPAdes/4.1.0-GCC-13.3.0
• Racon/1.5.0-GCCcore-13.3.0
• BLAST+/2.16.0-gompi-2024a

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