VCFtools

VCFtools is a software module available on Comet.

To access VCFtools on Comet, run module load VCFtools. This will load the default version of VCFtools.

An overview of the module information is shown below (module -r spider ^VCFtools$):

VCFtools: VCFtools/0.1.16-GCC-13.2.0
    Description:
      The aim of VCFtools is to provide easily accessible methods for working with complex genetic variation data in the form of VCF
      files.

    This module can be loaded directly: module load VCFtools/0.1.16-GCC-13.2.0

    Help:
      
      Description
      ===========
      The aim of VCFtools is to provide
       easily accessible methods for working with complex
       genetic variation data in the form of VCF files.
      
      More information
      ================
       - Homepage: https://vcftools.github.io

If there are multiple versions of VCFtools listed, then you can load a specific version as follows:

$ module load VCFtools/version_string

You can find the most up to date information whilst logged on to Comet by running module -r spider ^VCFtools$.

The module VCFtools has the following embedded help text (module help VCFtools):

Description
===========
The aim of VCFtools is to provide
 easily accessible methods for working with complex
 genetic variation data in the form of VCF files.

More information
================
 - Homepage: https://vcftools.github.io

The default version of the module VCFtools has the following dependencies:

• GCC/13.2.0
• zlib/1.2.13-GCCcore-13.2.0
• Perl/5.38.0-GCCcore-13.2.0
• HTSlib/1.19.1-GCC-13.2.0

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