Project Contacts

For further information about this project, please contact:

• Dr Deepak Veerappan (deepak.veerappan@newcastle.ac.uk)
• Dr Simon Maddock (simon.maddock@newcastle.ac.uk)

Project Description

Parallelised jobs. Mostly a mixture of python, perl, R. Processing of large datasets requiring high memory.

Software or Compute Methods

MrBayes (https://nbisweden.github.io/MrBayes/download.html)

BEAST (https://www.beast2.org/)

conda

anaconda/miniconda

R (latest version)

SPAdes (https://github.com/ablab/spades)

PAML (https://github.com/abacus-gene/paml)

Singularity (https://docs.sylabs.io/guides/3.0/user-guide/installation.html#install-on-linux)

RAXML-NG (https://github.com/amkozlov/raxml-ng)