Project Contacts

For further information about this project, please contact:

• None (None)
• Dr Thomas Howard (thomas.howard@newcastle.ac.uk)

Project Description

I'll be assemble short reads from an existing transcriptome dataset to generate transcripts (using Trinity), and will align them to protein and transcriptomic datasets available on NCBI to assign annotations. I will also assign GO terms to clusters of transcripts.

Software or Compute Methods

Blast software (SRA toolkit) and Trinity