This is a historic project which has previously made use of HPC facilities at Newcastle University.
For further information about this project, please contact:
This project will be used by the Coffey lab for PGR projects and data analysis relevant to funding applications. Primarily ChIP-seq and RNA-seq analyses.
* Downloading data from GEO database
* Quality control of FASTQ files with FastQC
* Genome alignment
* Peak calling
* Differential gene expression
* General programming: Python 3 and R
Bowtie, MACS2, Python, R, CellRanger, FastQC, SAMtools
Our bioinformatics skills are also developing, so that will also impact what software and computer analyses we can do.