Our Research Projects

Cortical folding analysis and simulation

This is a historic project which has previously made use of HPC facilities at Newcastle University.

Project Contacts

For further information about this project, please contact:


Project Description

Many serial jobs (calling the software named above) with at least 4GB memory each.

Some of the software packages are openMP enabled (e.g. Freesurfer), which we'd like to use if possible.

We are less likely to need interactive jobs.


Software or Compute Methods

-Matlab (all standard toolboxes)
-AFNI (https://afni.nimh.nih.gov/)
-"Nipy" python modules
-Freesurfer (https://surfer.nmr.mgh.harvard.edu/)
-FSL (https://fsl.fmrib.ox.ac.uk/fsl/fslwiki/FSL)
-DSI studio (http://dsi-studio.labsolver.org/)

(All software are free to use for academic purposes.)