This is a project which is currently making use of HPC facilities at Newcastle University. It is active.
For further information about this project, please contact:
This project will include use and refinement of Nextflow pipelines for the analysis of metabarcoding data, and comparative analysis using conventional modular analysis workflows (e.g., cutadapt, DADA2, BLAST).
Nextflow containerised workflow including Nanofilt, Cutadapt, Amplicon sorter, Medaka, BLASTn, Nanoplot, taxonomizr, Multiqc. Other modules for standard modular analysis including Cutadapt, BLAST, R.