This is a project which is currently making use of HPC facilities at Newcastle University. It is active.
For further information about this project, please contact:
We have bulk RNA-seq, single-nuclei RNA-seq and spatial (Visium HD) data from FSHD and control datasets. We are currently doing bioinformatics analyses on this data.
We would need to access OnDemand sessions, mainly Jupyter notebook and R, for downstream analyses since we need to visualise the results as we go. For command line tools, we would need FastQC, MultiQC, fastp, STAR, HISAT2, Salmon, samtools, bedtools and featureCounts.