We found the following 26 published projects which all share the keyword samtools amongst their description of software or software methods used.

Title
ALL_Mito
Analysis of snRNAseq data of muscle samples from patients with muscular diseases
Antimicrobial Resistance
BSU Pilot
Daryl Shanley's Lab
Development of microsatellite instability assays
Epigenetics of MSK
Exploring the role of repetitive genomic regions in childhood cancer and leukaemia, using long-read and hybrid sequencing technologies
FSHD omics data
Herpetology genomics
High throughput transcriptomics of Cyanobacteria
IBD-RESPONSE
Investigating Mitochondrial Translation Defects
Leukaemia Genomics
LifeArc Centre for Rare Mitochondrial Diseases Award
Liquid biopsy diagnostic and predictive biomarker discovery in hepatocellular carcinoma
Low-frequency variant calling from high-quality mtDNA sequencing data
Mitochondrial DNA mutations in upper GI cancers
Mitochondrial DNA, maintenance, disease and propagation
Rana temporaria ddRADseq
Shark and ray population genetics
T-max
The human RNA exosome
Utilising Inherent Mitochondrial DNA-Induced Oxidative Phosphorylation Defects for Therapeutic Targeting in Colorectal Cancer
Vipera berus WGS
mtDNA disease heterogeneity