We found the following 29 published projects which all share the keyword samtools amongst their description of software or software methods used.

Title
ALL_Mito
Analysis of snRNAseq data of muscle samples from patients with muscular diseases
Antimicrobial Resistance
BSU Pilot
Bioinformatic and bioimaging analysis of stress responses in Gram-negative bacteria
Daryl Shanley's Lab
Development of microsatellite instability assays
Epigenetics of MSK
Exploring the role of repetitive genomic regions in childhood cancer and leukaemia, using long-read and hybrid sequencing technologies
FSHD omics data
Glab_seq
Herpetology genomics
High throughput transcriptomics of Cyanobacteria
IBD-RESPONSE
Investigating Mitochondrial Translation Defects
Leukaemia Genomics
LifeArc Centre for Rare Mitochondrial Diseases Award
Liquid biopsy diagnostic and predictive biomarker discovery in hepatocellular carcinoma
Low-frequency variant calling from high-quality mtDNA sequencing data
Mitochondrial DNA mutations in upper GI cancers
Mitochondrial DNA, maintenance, disease and propagation
Rana temporaria ddRADseq
Shark and ray population genetics
T-max
The human RNA exosome
Utilising Inherent Mitochondrial DNA-Induced Oxidative Phosphorylation Defects for Therapeutic Targeting in Colorectal Cancer
Vipera berus WGS
cfDNA Sequencing in Rare Cancers
mtDNA disease heterogeneity