Our Research Projects

  1. Projects
  2. Our Research Projects
  3. The human RNA exosome

The human RNA exosome

This is a historic project which has previously made use of HPC facilities at Newcastle University.

Project Contacts

For further information about this project, please contact:


Project Description

Computational Analysis of RNAseq and Nanopore sequencing data


Software or Compute Methods

FastQC (https://github.com/s-andrews/FastQC);
STAR (https://github.com/alexdobin/STAR);
Java (https://www.java.com/en/download/help/linux_x64_install.html);
picard (https://github.com/broadinstitute/picard/releases/tag/3.1.1);
SAMtools (http://github.com/samtools/samtools);
BEDTools (https://github.com/arq5x/bedtools2);
HTSeq (https://htseq.readthedocs.io/en/master/install.html);
R (https://cran.r-project.org/bin/linux/ubuntu/fullREADME.html);

GATK (https://gatk.broadinstitute.org/hc/en-us/articles/360036194592-Getting-started-with-GATK4);
Perl (https://www.perl.org/get.html);
Python (https://www.python.org/downloads/