We found the following 13 published projects which all share the keyword bedtools amongst their description of software or software methods used.

Title
A systematic comparison of integrated genomic platforms and bioinformatics pipelines for next generation sequencing in patients with rare neuromuscular disease
Analysis of snRNAseq data of muscle samples from patients with muscular diseases
Bioinformatics Support Unit
Epigenetics of MSK
FSHD omics data
Genomic Characterisation of B cell non-Hodgkin Lymphoma
High throughput transcriptomics of Cyanobacteria
Investigating Mitochondrial Translation Defects
Leukaemia Genomics
Low-frequency variant calling from high-quality mtDNA sequencing data
Mitochondrial DNA, maintenance, disease and propagation
The human RNA exosome
mtDNA disease heterogeneity